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Data Management for Research

FAIR principles for Mathematical Sciences

The FAIR Principles in Mathematical Research Data

Research Data Services @ Carnegie Mellon University Libraries

A comprehensive guide to implementing FAIR principles in mathematical research


1. Introduction to FAIR Principles

The FAIR principles, first published in 2016 by Wilkinson et al., provide a framework for optimizing the reuse of scientific data. FAIR stands for Findable, Accessible, Interoperable, and Reusable.

"The FAIR principles focus specifically on data management and machine-friendly accessibility aspects with emphasis on metadata, rather than broader research transparency."

These principles are designed to support knowledge discovery and innovation both by humans and machines, to increase the value of accumulated digital research objects, and to enable automation in scientific processes.

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2. The Importance of FAIR in Mathematics

Mathematics research generates a wide variety of data types that benefit from structured management approaches. The implementation of FAIR principles in mathematics:

  • Enables verification, reproduction, and extension of research findings
  • Facilitates new investigations and hypotheses testing
  • Supports the combination of data from multiple sources to uncover novel insights
  • Enhances cross-disciplinary collaboration and knowledge transfer
  • Accelerates the pace of scientific discovery through efficient data reuse

As noted in the Scientific Data journal (2024): "The main goal is to make the scientific community more transparent and efficient by making it significantly easier to re-use previous research results. This openness not only facilitates collaboration within the mathematical community but also enhances cross-fertilization with other fields, fostering interdisciplinary approaches that can lead to new discoveries and innovations."

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3. Categories of Mathematical Research Data

Mathematical research encompasses diverse data types that require specialized management approaches:

Category Types Description
Symbolic data Formulae, Theorems, Proofs, Functions Expressions and notations for abstract reasoning and articulation of mathematical concepts
Numeric data Integer sequences, Matrices, Tensors, Finite lattices Numerical values and organized structures essential for analytical processes, representation, and computational challenges
Geometric data Curves, Surfaces, High-dimensional objects, Polytopes Mathematical and algorithmic depictions of shapes and structures pivotal to geometry, topology, and related disciplines
Models Math models, BioModels Simplified versions of real-world phenomena designed for predictive analysis and hypothesis testing
Observational data Simulations, Experiments, Observations Data gathered from direct observations, experiments, and simulations to explore and verify natural phenomena
Text data Research papers, encyclopedia entries Scholarly articles and academic books serving as primary sources for mathematical research and discussion
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4. Detailed FAIR Principles

4.1. Findable

The first step in data reuse is to find it. Metadata and data should be easy to discover for both humans and machines.

Principle Description Mathematical Implementation
F1 (Meta)data are assigned a globally unique and persistent identifier Assign DOIs to mathematical papers, proofs, datasets, and software
F2 Data are described with rich metadata Include comprehensive information about mathematical objects, theorems, or datasets
F3 Metadata clearly and explicitly include the identifier of the data it describes Ensure metadata records explicitly reference the persistent ID
F4 (Meta)data are registered or indexed in a searchable resource Submit to indexed repositories like arXiv or specialized mathematical databases
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4.2. Accessible

Once found, data needs to be accessible, potentially with appropriate authorization.

Principle Description Mathematical Implementation
A1 (Meta)data are retrievable by their identifier using a standardized communications protocol Ensure data is available via standard web protocols (HTTP/HTTPS)
A1.1 The protocol is open, free, and universally implementable Use non-proprietary access methods compatible with mathematical software
A1.2 The protocol allows for authentication and authorization where necessary Implement standard authentication methods for sensitive mathematical data
A2 Metadata remains accessible even when the data is no longer available Preserve metadata about mathematical objects even if implementations change
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4.3. Interoperable

Data should integrate with other data and be usable in different applications or workflows.

Principle Description Mathematical Implementation
I1 (Meta)data use a formal, accessible, shared, and broadly applicable language for knowledge representation Use standard formats like MathML, LaTeX, or other established notations
I2 (Meta)data use vocabularies that follow FAIR principles Implement mathematical subject classification (MSC) and other controlled vocabularies
I3 (Meta)data include qualified references to other (meta)data Include references to related mathematical objects, theorems, or datasets with standardized identifiers
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4.4. Reusable

The ultimate goal: data should be well-described to enable reuse in different settings.

Principle Description Mathematical Implementation
R1 (Meta)data are richly described with a plurality of accurate and relevant attributes Provide detailed contextual information about the mathematical content
R1.1 (Meta)data are released with a clear and accessible data usage license Choose appropriate open licenses (e.g., CC-BY, CC0) for mathematical content
R1.2 (Meta)data are associated with detailed provenance Document the origin, development history, and derivation of mathematical results
R1.3 (Meta)data meet domain-relevant community standards Adhere to established conventions in the respective mathematical subdiscipline
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5. Practical Implementation Guidelines

For Findability

  1. Use persistent identifiers: Register your mathematical research outputs (datasets, software, papers) with services that provide DOIs or other persistent identifiers
  2. Create comprehensive metadata: Include relevant mathematical subject classifications, keywords, abstract, author information, and related works
  3. Ensure identifier visibility: Make sure the persistent identifier is prominently displayed in the metadata and is machine-readable
  4. Select appropriate repositories: Choose repositories with good indexing and search capabilities specific to mathematical content

For Accessibility

  1. Utilize standard protocols: Make data accessible via standard web protocols that support mathematics (e.g., with proper rendering of equations)
  2. Consider access controls: If access restrictions are necessary, implement them at the data level while keeping metadata openly accessible
  3. Ensure long-term access: Partner with institutional repositories or discipline-specific archives that commit to long-term preservation
  4. Plan for data discontinuation: Establish protocols for maintaining metadata even if the underlying data becomes unavailable

For Interoperability

  1. Adopt standardized formats: Use established formats for mathematical content (e.g., LaTeX, MathML, standard formats for matrices and other mathematical objects)
  2. Implement controlled vocabularies: Utilize the Mathematics Subject Classification (MSC) and other standardized terminology
  3. Enable semantic relationships: Explicitly document relationships between different mathematical objects, proofs, and theorems
  4. Support machine readability: Structure data and metadata to facilitate automated processing

For Reusability

  1. Provide detailed documentation: Include comprehensive information about the context, methodology, and potential applications
  2. Select appropriate licenses: Choose licenses that facilitate reuse while respecting intellectual contribution (e.g., Creative Commons licenses)
  3. Document provenance: Clearly describe the origin, validation methods, and transformations applied to the data
  4. Follow community standards: Adhere to established practices within specific mathematical subdisciplines
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6. Current Challenges in Mathematics

The implementation of FAIR principles in mathematics faces several discipline-specific challenges:

  1. Metadata standardization: Lack of uniform metadata standards across different branches of mathematics
  2. Persistent identifier adoption: Inconsistent use of persistent identifiers for mathematical objects
  3. Data-metadata distinction: Often unclear separation between mathematical data and its descriptive metadata
  4. Machine-readable formats: Limited availability of machine-readable formats for complex mathematical structures
  5. Standardized vocabulary: Absence of comprehensive controlled vocabularies that span all mathematical subfields
  6. Provenance documentation: Difficulty in documenting complex chains of mathematical reasoning in standardized formats

These challenges are reflected in the current state of mathematical data repositories, with most systems fulfilling the FAIR principles for findability and accessibility but showing lower compliance rates for interoperability and reusability.

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7. Recommended Repositories

Repository Focus Features URL
arXiv Preprints in mathematics and related fields DOIs, long-term preservation, high visibility arxiv.org
OEIS Integer sequences Standardized format, comprehensive metadata oeis.org
FindStat Combinatorial statistics Unique identifiers, integration with computational tools findstat.org
Archive of Formal Proofs Formally verified proofs Peer-reviewed, machine-checkable proofs isa-afp.org
Zenodo Multidisciplinary (incl. mathematics) DOIs, versioning, integration with GitHub zenodo.org
SuiteSparse Matrix Collection Sparse matrices Standardized formats, rich metadata sparse.tamu.edu
BioModels Mathematical models in biology Unique identifiers, standardized formats ebi.ac.uk/biomodels
Harvard Dataverse Multidisciplinary data repository DOIs, versioning, rich metadata capabilities dataverse.harvard.edu
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8. FAIR Compliance Checklist

Use this checklist to assess and improve the FAIR compliance of your mathematical research data:

Findability Assessment

Accessibility Assessment

Interoperability Assessment

Reusability Assessment

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9. References

  1. Wilkinson, M. D., et al. (2016). The FAIR Guiding Principles for scientific data management and stewardship. Scientific Data, 3, 1-9.
  2. Conrad, T. O. F., et al. (2024). Making Mathematical Research Data FAIR: Pathways to Improved Data Sharing. Scientific Data, 11:676.
  3. Leipzig, J., et al. (2021). The role of metadata in reproducible computational research. Patterns, 2, 100322.
  4. Pampel, H., et al. (2013). Making Research Data Repositories Visible: The re3data.org Registry. PLOS ONE, 8, e78080.
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